From: Investigation on the role of nsSNPs in HNPCC genes – a bioinformatics approach
Gene ids | SNP ids | Region | Functional significance |
---|---|---|---|
MLH1 | rs11541859 | Coding nonsynonymous | Exonic splicing enhancers |
rs1799977 | Coding nonsynonymous | Exonic splicing enhancers | |
rs1800149 | Coding nonsynonymous | Exonic splicing enhancers | |
rs34213726 | Coding nonsynonymous | Exonic splicing enhancers | |
rs34285587 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35045067 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35831931 | Coding nonsynonymous | Exonic splicing enhancers | |
rs1803985 | mRNA | Exonic splicing silencers | |
MSH2 | rs17217716 | Coding nonsynonymous | Exonic splicing enhancers |
rs17217723 | Coding nonsynonymous | Exonic splicing enhancers | |
rs17224367 | Coding nonsynonymous | Exonic splicing enhancers | |
rs1802577 | Coding nonsynonymous | Exonic splicing enhancers | |
rs33946261 | Coding nonsynonymous | Exonic splicing enhancers | |
rs34136999 | Coding nonsynonymous | Exonic splicing enhancers | |
rs34319539 | Coding nonsynonymous | Exonic splicing enhancers | |
rs34986638 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35107951 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35717997 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35784190 | Coding nonsynonymous | Exonic splicing enhancers | |
rs4987188 | Coding nonsynonymous | Exonic splicing enhancers | |
rs12476364 | intron | intron/exon junctions | |
MSH6 | rs1042821 | Coding nonsynonymous | Exonic splicing enhancers |
rs2020908 | Coding nonsynonymous | Exonic splicing enhancers | |
rs2020912 | Coding nonsynonymous | Exonic splicing enhancers | |
rs3136334 | Coding nonsynonymous | Exonic splicing enhancers | |
rs3211299 | Coding nonsynonymous | Exonic splicing enhancers | |
rs34014629 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35462442 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35552856 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35946687 | Coding nonsynonymous | Exonic splicing enhancers | |
rs728619 | Coding nonsynonymous | Exonic splicing enhancers | |
rs3211299 | Coding nonsynonymous | Exonic splicing silencers | |
rs34938432 | Coding nonsynonymous | Exonic splicing silencers | |
PMS1 | rs1145231 | Coding nonsynonymous | Exonic splicing enhancers |
rs1145232 | Coding nonsynonymous | Exonic splicing enhancers | |
rs1145234 | Coding nonsynonymous | Exonic splicing enhancers | |
rs2066456 | Coding nonsynonymous | Exonic splicing enhancers | |
rs2066459 | Coding nonsynonymous | Exonic splicing enhancers | |
rs5742932 | mRNA | Exonic splicing enhancers | |
rs5742932 | mRNA | Exonic splicing silencers | |
rs5742933 | mRNA | Exonic splicing silencers | |
PMS2 | rs10254120 | Coding nonsynonymous | Exonic splicing enhancers |
rs1805318 | Coding nonsynonymous | Exonic splicing enhancers | |
rs1805321 | Coding nonsynonymous | Exonic splicing enhancers | |
rs1805322 | Coding nonsynonymous | Exonic splicing enhancers | |
rs1805323 | Coding nonsynonymous | Exonic splicing enhancers | |
rs2228007 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35629870 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35690297 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35911407 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35943120 | Coding nonsynonymous | Exonic splicing enhancers | |
rs36038802 | Coding nonsynonymous | Exonic splicing enhancers | |
rs35943120 | Coding nonsynonymous | Exonic splicing silencers |