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Table 2 List of SNPs in HNPCC genes predicted by PupaSuite.

From: Investigation on the role of nsSNPs in HNPCC genes – a bioinformatics approach

Gene ids

SNP ids

Region

Functional significance

MLH1

rs11541859

Coding nonsynonymous

Exonic splicing enhancers

 

rs1799977

Coding nonsynonymous

Exonic splicing enhancers

 

rs1800149

Coding nonsynonymous

Exonic splicing enhancers

 

rs34213726

Coding nonsynonymous

Exonic splicing enhancers

 

rs34285587

Coding nonsynonymous

Exonic splicing enhancers

 

rs35045067

Coding nonsynonymous

Exonic splicing enhancers

 

rs35831931

Coding nonsynonymous

Exonic splicing enhancers

 

rs1803985

mRNA

Exonic splicing silencers

MSH2

rs17217716

Coding nonsynonymous

Exonic splicing enhancers

 

rs17217723

Coding nonsynonymous

Exonic splicing enhancers

 

rs17224367

Coding nonsynonymous

Exonic splicing enhancers

 

rs1802577

Coding nonsynonymous

Exonic splicing enhancers

 

rs33946261

Coding nonsynonymous

Exonic splicing enhancers

 

rs34136999

Coding nonsynonymous

Exonic splicing enhancers

 

rs34319539

Coding nonsynonymous

Exonic splicing enhancers

 

rs34986638

Coding nonsynonymous

Exonic splicing enhancers

 

rs35107951

Coding nonsynonymous

Exonic splicing enhancers

 

rs35717997

Coding nonsynonymous

Exonic splicing enhancers

 

rs35784190

Coding nonsynonymous

Exonic splicing enhancers

 

rs4987188

Coding nonsynonymous

Exonic splicing enhancers

 

rs12476364

intron

intron/exon junctions

MSH6

rs1042821

Coding nonsynonymous

Exonic splicing enhancers

 

rs2020908

Coding nonsynonymous

Exonic splicing enhancers

 

rs2020912

Coding nonsynonymous

Exonic splicing enhancers

 

rs3136334

Coding nonsynonymous

Exonic splicing enhancers

 

rs3211299

Coding nonsynonymous

Exonic splicing enhancers

 

rs34014629

Coding nonsynonymous

Exonic splicing enhancers

 

rs35462442

Coding nonsynonymous

Exonic splicing enhancers

 

rs35552856

Coding nonsynonymous

Exonic splicing enhancers

 

rs35946687

Coding nonsynonymous

Exonic splicing enhancers

 

rs728619

Coding nonsynonymous

Exonic splicing enhancers

 

rs3211299

Coding nonsynonymous

Exonic splicing silencers

 

rs34938432

Coding nonsynonymous

Exonic splicing silencers

PMS1

rs1145231

Coding nonsynonymous

Exonic splicing enhancers

 

rs1145232

Coding nonsynonymous

Exonic splicing enhancers

 

rs1145234

Coding nonsynonymous

Exonic splicing enhancers

 

rs2066456

Coding nonsynonymous

Exonic splicing enhancers

 

rs2066459

Coding nonsynonymous

Exonic splicing enhancers

 

rs5742932

mRNA

Exonic splicing enhancers

 

rs5742932

mRNA

Exonic splicing silencers

 

rs5742933

mRNA

Exonic splicing silencers

PMS2

rs10254120

Coding nonsynonymous

Exonic splicing enhancers

 

rs1805318

Coding nonsynonymous

Exonic splicing enhancers

 

rs1805321

Coding nonsynonymous

Exonic splicing enhancers

 

rs1805322

Coding nonsynonymous

Exonic splicing enhancers

 

rs1805323

Coding nonsynonymous

Exonic splicing enhancers

 

rs2228007

Coding nonsynonymous

Exonic splicing enhancers

 

rs35629870

Coding nonsynonymous

Exonic splicing enhancers

 

rs35690297

Coding nonsynonymous

Exonic splicing enhancers

 

rs35911407

Coding nonsynonymous

Exonic splicing enhancers

 

rs35943120

Coding nonsynonymous

Exonic splicing enhancers

 

rs36038802

Coding nonsynonymous

Exonic splicing enhancers

 

rs35943120

Coding nonsynonymous

Exonic splicing silencers