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Table 1 Characteristics of genomic regions genotyped in this study

From: TagSNP transferability and relative loss of variability prediction from HapMap to an admixed population

SNP rs Gene Allele Chr Position Average Distance (Kb) Gene Extension (Kb)
rs3789607 PTPN22 C/T 1 114078476 5.80 34.80
rs2476600 PTPN22 A/G 1 114081776   
rs1217395 PTPN22 A/G 1 114086477   
rs2476601 PTPN22 A/G 1 114089610   
rs2476602 PTPN22 A/G 1 114108997   
rs1217418 PTPN22 A/G 1 114113273   
rs3931914 HMGCR C/G 5 74663770 4.08 28.52
rs3761740 HMGCR A/C 5 74667889   
rs10515198 HMGCR C/T 5 74677316   
rs2241402 HMGCR A/T 5 74682011   
rs12654264 HMGCR A/T 5 74684359   
rs2303151 HMGCR A/G 5 74691207   
rs12916 HMGCR C/T 5 74692295   
rs2544040 VDR A/G 12 46509213 4.42 79.60
rs11608702 VDR A/T 12 46515035   
rs7968585 VDR C/T 12 46518360   
rs9729 VDR A/C 12 46522890   
rs731236 (TaqI) VDR C/T 12 46525024   
rs7975232 (ApaI) VDR A/C 12 46525104   
rs1544410 (BsmI) VDR A/G 12 46526102   
rs2248098 VDR C/T 12 46539623   
rs2239179 VDR A/G 12 46544033   
rs886441 VDR C/T 12 46549231   
rs10735810 (FokI) VDR A/G 12 46559162   
rs2254210 VDR A/G 12 46559981   
rs2853564 VDR C/T 12 46564754   
rs2853559 VDR C/T 12 46569072   
rs3890734 VDR A/G 12 46575622   
rs10783219 VDR A/T 12 46581755   
rs4516035 VDR C/T 12 46586093   
rs11568820 (CDX-2) VDR A/G 12 46588812   
rs3764261 CETP G/T 16 55550825 5.10 30.61
rs711752 CETP A/G 16 55553712   
rs1532624 CETP G/T 16 55562980   
rs5882 CETP A/G 16 55573593   
rs2303790 CETP A/G 16 55574793   
rs289747 CETP A/G 16 55581439   
  1. SNPs are identified by their rs number, gene, alleles, chromosome and position according to HapMap release #23a (NCBI build 36, dbSNP b126), average distance between markers and gene extension in Kb.