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Table 3 Loss of SNP prediction coverage in BRA using HapMap tagSNPs

From: TagSNP transferability and relative loss of variability prediction from HapMap to an admixed population

TagSNP set

PTPN22

HMGCR

VDR

CETP

A.V. ± S.D.

CHB+JPT

3.035

4.936

6.448

0.253

3.668 ± 2.671

CEU

7.995

3.600

4.211

2.120

4.481 ± 2.501

YRI

7.608

2.222

12.078

3.580

6.372 ± 4.438

POOL

2.940

4.390

4.221

2.198

3.437 ± 1.050

  1. Loss of SNP prediction coverage is given by percentage point difference between the SNP prediction defined in BRA and the prediction in BRA using the set of tagSNPs selected for the HapMap populations. Last column displays average values ± standard deviation.
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Journal of Biomedical Science

ISSN: 1423-0127