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Table 1 List of primers used in the present study to amplify genes

From: HLA class II SNP interactions and the association with type 1 diabetes mellitus in Bengali speaking patients of Eastern India

Designation

Chromosome location

Sequence

Annealing temperature

Product size(bp)

HLA-DPA1*

6p21.3 (Exon2)

F-5’ GCGGACCATGTGTGTCAACTTAT 3’

55°C

210

R-5’ GCCTGAGTGTGGTTGGAACG 3’

HLA-DPB1*

6p21.3 (Exon2)

F-5’ GAGAGTGGCGCCTCCGCTCAT 3’

63°C

327

R-5’ GCCGGCCCAAAGCCCTCACTC 3’

HLA-DQA1

6p21.3$ (Exon1)

F-5’ CAAACTCTTCAGCTAGTAAC 3’

58°C

262

R-5’ CATGCACTCACCCACAAT 3’

6p21.3* (Exon2)

F-5’ ATGGTGTAAACTTGTACCAGT 3’

55°C

229

R-5’ TTGGTAGCAGCGGTAGAGTTG 3’

 

6p21.3$ (Exon3)

F-5’ AGGTTCCTGAGGTCACAGTGTTT 3’

54°C

328

R-5’ CTTGACAGACAAGAAAGCATC 3’

HLA-DQB1*

6p21.3(Exon2)

F-5’ CATGTGCTACTTCACCAACGG 3’

58°C

211

R-5’ CTGGTAGTTGTGTCTGCACAC 3’

HLA-DRB1*

6p21.3(Exon2)

F-5’ CCCCACAGCACGTTTCTTG 3’

60°C

274

R-5’ CCGCTGCACTGTGAAGCTCT 3’

  1. *(Tanaka et al. 1999), $(Cordovado et al. 2005).