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Table 2 Genotyping of SNPs in LD blocks

From: HLA class II SNP interactions and the association with type 1 diabetes mellitus in Bengali speaking patients of Eastern India

  Genotype MAF (%) HWE-p value Dominant OR (p value) Recessive OR (p value) Allelic OR(p value)
rs1047993 TT TC CC      
Cases 2 (1.45) 26 (18.84) 110 (79.79) 10.9 0.745    
Control 2 (1.33) 18 (12.0) 130 (86.67) 7.3 0.152 1.65 (0.114) 1.09 (0.933) 1.54 (0.139)
rs9272699 AA AC CC      
Cases 2 (1.42) 15 (10.64) 124 (87.94) 6.7 0.068    
Control 0 (0) 15 (10.14) 133 (89.86) 5.1 0.516 1.22 (0.603)   1.35 (0.394)
rs1048052 CC AC AA      
Cases 4 (2.84) 17 (12.06) 120 (85.11) 8.9 0.003    
Control 0 (0) 17 (11.49) 131 (88.51) 5.7 0.459 1.35 (0.392)   1.60 (0.148)
rs36219014 TT CT CC      
Cases 0 (0) 17 (12.06) 124 (87.94) 6 0.446    
Control 0 (0) 15 (10.27) 131 (89.73) 5.1 0.513 120 (0.631)   1.18 (0.642)
rs707962 GG GT TT      
Cases 0 (0) 30 (20.69) 115 (79.31) 10.3 0.165    
Control 0 (0) 19 (12.58) 132 (87.42) 6.3 0.409 1.81 (0.061)   1.72 (0.074)
rs2308911 CC CA AA      
Cases 15 (10.95) 66 (48.18) 56 (40.88) 35 0.495    
Control 14 (10.37) 61 (45.19) 60 (44.44) 33 0.795 1.16 (0.552) 1.06 (0.877) 1.10 (0.610)
rs2308912 AA AT TT      
Cases 14 (10.0) 64 (45.71) 62 (44.29) 32.9 0.669    
Control 12 (9.09) 61 (46.21) 59 (44.70) 32.2 0.502 1.02 (0.946) 1.11 (0.799) 1.03 (0.870)
rs707949 CC CT TT      
Cases 0 (0) 30 (20.69) 115 (79.31) 10.3 0.165    
Control 0 (0) 20 (13.25) 131 (86.75) 6.6 0.384 1.71 (0.087)   1.63 (0.104)
rs7990 AA AC CC      
Cases 0 (0) 14 (9.72) 130 (90.28) 4.9 0.549    
Control 0 (0) 31 (20.53) 120 (79.47) 10.3 0.160 0.42 (0.009)   0.45 (0.013)
rs707963 GG GT TT      
Cases 0 (0) 28 (19.31) 117 (80.69) 9.7 0.198    
Control 0 (0) 18 (11.92) 133 (88.08) 6 0.436 1.77 (0.079)   1.69 (0.093)
  1. MAF = Minor Allele Frequency, HWE = Hardy-Weinberg Equilibrium.