Table 2 Genotyping of SNPs in LD blocks
Genotype | MAF (%) | HWE-p value | Dominant OR (p value) | Recessive OR (p value) | Allelic OR(p value) | |||
|---|---|---|---|---|---|---|---|---|
rs1047993 | TT | TC | CC | |||||
Cases | 2 (1.45) | 26 (18.84) | 110 (79.79) | 10.9 | 0.745 | |||
Control | 2 (1.33) | 18 (12.0) | 130 (86.67) | 7.3 | 0.152 | 1.65 (0.114) | 1.09 (0.933) | 1.54 (0.139) |
rs9272699 | AA | AC | CC | |||||
Cases | 2 (1.42) | 15 (10.64) | 124 (87.94) | 6.7 | 0.068 | |||
Control | 0 (0) | 15 (10.14) | 133 (89.86) | 5.1 | 0.516 | 1.22 (0.603) | 1.35 (0.394) | |
rs1048052 | CC | AC | AA | |||||
Cases | 4 (2.84) | 17 (12.06) | 120 (85.11) | 8.9 | 0.003 | |||
Control | 0 (0) | 17 (11.49) | 131 (88.51) | 5.7 | 0.459 | 1.35 (0.392) | 1.60 (0.148) | |
rs36219014 | TT | CT | CC | |||||
Cases | 0 (0) | 17 (12.06) | 124 (87.94) | 6 | 0.446 | |||
Control | 0 (0) | 15 (10.27) | 131 (89.73) | 5.1 | 0.513 | 120 (0.631) | 1.18 (0.642) | |
rs707962 | GG | GT | TT | |||||
Cases | 0 (0) | 30 (20.69) | 115 (79.31) | 10.3 | 0.165 | |||
Control | 0 (0) | 19 (12.58) | 132 (87.42) | 6.3 | 0.409 | 1.81 (0.061) | 1.72 (0.074) | |
rs2308911 | CC | CA | AA | |||||
Cases | 15 (10.95) | 66 (48.18) | 56 (40.88) | 35 | 0.495 | |||
Control | 14 (10.37) | 61 (45.19) | 60 (44.44) | 33 | 0.795 | 1.16 (0.552) | 1.06 (0.877) | 1.10 (0.610) |
rs2308912 | AA | AT | TT | |||||
Cases | 14 (10.0) | 64 (45.71) | 62 (44.29) | 32.9 | 0.669 | |||
Control | 12 (9.09) | 61 (46.21) | 59 (44.70) | 32.2 | 0.502 | 1.02 (0.946) | 1.11 (0.799) | 1.03 (0.870) |
rs707949 | CC | CT | TT | |||||
Cases | 0 (0) | 30 (20.69) | 115 (79.31) | 10.3 | 0.165 | |||
Control | 0 (0) | 20 (13.25) | 131 (86.75) | 6.6 | 0.384 | 1.71 (0.087) | 1.63 (0.104) | |
rs7990 | AA | AC | CC | |||||
Cases | 0 (0) | 14 (9.72) | 130 (90.28) | 4.9 | 0.549 | |||
Control | 0 (0) | 31 (20.53) | 120 (79.47) | 10.3 | 0.160 | 0.42 (0.009) | 0.45 (0.013) | |
rs707963 | GG | GT | TT | |||||
Cases | 0 (0) | 28 (19.31) | 117 (80.69) | 9.7 | 0.198 | |||
Control | 0 (0) | 18 (11.92) | 133 (88.08) | 6 | 0.436 | 1.77 (0.079) | 1.69 (0.093) | |