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Table 1 Summary of the SAPAS data from Illumina HiSeq 2000 sequencing

From: Differential genome-wide profiling of alternative polyadenylation sites in nasopharyngeal carcinoma by high-throughput sequencing

  NPC NNET
  NPC1 NPC2 NPC3 NPC4 NPC5 NPC6 NNET1 NNET2 NNET3 NNET4 NNET5 NNET6
Raw reads(M*) 26.08 23.81 24.48 25.29 25.14 20.99 25.94 23.91 25.77 24.87 26.97 24.56
Clean reads(M) 25.90 23.54 24.06 24.94 24.94 20.83 25.77 23.59 25.33 24.70 26.64 24.42
Mapped to genome(M) 21.73 19.75 20.02 21.06 21.39 17.45 21.28 19.49 21.09 19.53 19.46 21.10
Uniquely mapped to genome(M) 17.02 16.42 16.11 16.82 17.29 14.33 17.45 15.87 17.75 16.17 15.72 17.48
 Mapped to nuclear genome(M) 13.32 14.63 13.11 13.02 14.69 13.34 15.21 14.45 15.71 14.57 13.92 14.76
  Passed Internal Priming filter(M) 11.51 9.83 10.18 10.30 12.68 11.36 12.00 11.47 10.01 12.50 12.06 12.36
  Genes sampled by reads(10 K) 1.78 1.89 1.88 1.90 1.80 1.83 1.86 1.88 1.91 1.88 1.73 1.87
  Poly(A) sites(10 K) 13.70 29.99 17.36 19.04 13.82 12.50 22.75 18.14 36.03 16.28 12.45 14.90
  Known poly(A) sites sampled(10 K) 2.75 2.90 2.89 2.89 2.82 2.87 2.84 2.92 2.86 2.97 2.67 2.90
  Putative novel poly(A) sites(10 K) 10.95 27.09 14.47 16.15 11.00 9.63 19.91 15.21 33.17 13.31 9.78 12.01
  Genes sampled by poly(A) sites(10 K) 1.62 1.72 1.71 1.73 1.63 1.66 1.73 1.72 1.73 1.72 1.53 1.72
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