Differential genome-wide profiling of alternative polyadenylation sites in nasopharyngeal carcinoma by high-throughput sequencing

Table 2 Genes with APA site switching between NPC and NNET tissues using a pair-wise case-control analysis

Pairs	3’UTR shortened genes	3’UTR lengthened genes	Combined
NPC1 vs. NNET1	104	372	476
NPC1 vs. NNET2	179	192	371
NPC1 vs. NNET3	144	247	391
NPC1 vs. NNET4	58	242	300
NPC1 vs. NNET5	99	446	545
NPC1 vs. NNET6	51	123	174
NPC2 vs. NNET1	55	85	140
NPC2 vs. NNET2	91	13	104
NPC2 vs. NNET3	108	38	146
NPC2 vs. NNET4	100	85	185
NPC2 vs. NNET5	123	234	357
NPC2 vs. NNET6	184	106	290
NPC3 vs. NNET1	63	143	206
NPC3 vs. NNET2	104	23	127
NPC3 vs. NNET3	51	26	77
NPC3 vs. NNET4	79	103	182
NPC3 vs. NNET5	68	178	246
NPC3 vs. NNET6	149	111	260
NPC4 vs. NNET1	62	167	229
NPC4 vs. NNET2	210	104	314
NPC4 vs. NNET3	136	115	251
NPC4 vs. NNET4	158	236	394
NPC4 vs. NNET5	156	355	511
NPC4 vs. NNET6	133	125	258
NPC5 vs. NNET1	158	377	535
NPC5 vs. NNET2	193	116	309
NPC5 vs. NNET3	150	153	303
NPC5 vs. NNET4	55	112	167
NPC5 vs. NNET5	107	286	393
NPC5 vs. NNET6	66	82	148
NPC6 vs. NNET1	102	202	304
NPC6 vs. NNET2	137	24	161
NPC6 vs. NNET3	147	99	246
NPC6 vs. NNET4	53	58	111
NPC6 vs. NNET5	90	172	262
NPC6 vs. NNET6	139	76	215

ISSN: 1423-0127