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Table 3 The differentially expressed flagellum- and five ESSSs-related genes between WT-RS218 and Δprc-RS218 by RNA-seq analysis

From: The role of the bacterial protease Prc in the uropathogenesis of extraintestinal pathogenic Escherichia coli

Gene name

Gene product / functional description

Fold changea

P value

Flagellum-related genes

flhD

Transcriptional activator of flagellar class II operons

0.73

0.019

fliT

Chaperone of flagellar export system

0.59

0.002

fliP

Flagellin export apparatus, integral membrane protein

0.51

0.004

fliE

Flagellar synthesis; basal body component

0.46

0.003

fliD

Hook-associated protein 2

0.31

0.011

σE regulon

wza

Polysaccharide export protein

9.12

0.015

wzc

Tyrosine-protein kinase Etk/Wzc

3.49

0.036

hpf

Putative σN modulation protein

2.66

0.041

uspD

Universal stress protein D

2.50

0.025

rpoN

RNA polymerase subunit, σN

2.46

0.016

yiiS

Unknown function

2.42

0.033

iaaA

Beta-aspartyl-peptidase

2.40

0.001

ecfJ

Unknown function

2.07

0.002

yeaY

Predicted lipoprotein

2.02

0.029

insK

IS150 conserved protein Insb, integrase core domain protein

1.84

0.018

fabZ

3R-hydroxymyristoyl acyl carrier protein (ACP) dehydratase

1.79

0.008

bamE

Lipoprotein stabilizer of BamABCDE OM biogenesis complex

1.74

0.033

rseA

Anti-RNA polymerase sigma factor σE

1.53

0.013

tolB

Tol-Pal cell envelope complex

1.44

0.025

clpX

ATPase subunit of ClpXP protease

1.43

0.034

rutR

TetR/AcrR family transcriptional regulator

1.41

0.029

mdoG

Periplasmic glucan biosynthesis

1.37

0.006

lptD

LPS assembly outer membrane complex protein

1.35

0.041

plsB

Glycerol-3-phosphate O-acyltransferase

1.34

0.027

rfaD

ADP-L-glycero-D-mannoheptose-6-epimerase

1.33

0.003

fkpA

Periplasmic peptidylprolyl cis-trans isomerase

1.23

0.004

RcsB regulon

yjbE

Exopolysaccharide production protein

12.37

0.035

wza

Polysaccharide export protein

9.12

0.015

wzc

Tyrosine-protein kinase Etk/Wzc

3.49

0.036

osmC

Osmotically inducible protein OsmC

2.32

0.035

osmB

Osmotically inducible lipoprotein

1.90

0.048

rarA

Recombinase RarA

1.39

0.006

CpxR regulon

mviM

Putative virulence factor

2.09

0.016

aroG

2-dehydro-3-deoxyphosphoheptonate aldolase

1.93

0.004

mdtC

MdtABC-TolC efflux pump

1.52

0.026

slt

Soluble lytic murein transglycosylase

1.49

0.02

ppiA

Peptidylprolyl cis-trans isomerase A

1.16

0.012

mdtB

MdtABC-TolC efflux pump

1.15

0.002

QseB regulon

qseB

Quorum sensing two-component response regulator

1.50

0.018

OmpR regulon

ompC

Outer membrane porin protein C

3.29

0.031

  1. a, indicates fold change relative to WT-RS218
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Journal of Biomedical Science

ISSN: 1423-0127