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Table 3 The differentially expressed flagellum- and five ESSSs-related genes between WT-RS218 and Δprc-RS218 by RNA-seq analysis

From: The role of the bacterial protease Prc in the uropathogenesis of extraintestinal pathogenic Escherichia coli

Gene nameGene product / functional descriptionFold changeaP value
Flagellum-related genes
flhDTranscriptional activator of flagellar class II operons0.730.019
fliTChaperone of flagellar export system0.590.002
fliPFlagellin export apparatus, integral membrane protein0.510.004
fliEFlagellar synthesis; basal body component0.460.003
fliDHook-associated protein 20.310.011
σE regulon
wzaPolysaccharide export protein9.120.015
wzcTyrosine-protein kinase Etk/Wzc3.490.036
hpfPutative σN modulation protein2.660.041
uspDUniversal stress protein D2.500.025
rpoNRNA polymerase subunit, σN2.460.016
yiiSUnknown function2.420.033
iaaABeta-aspartyl-peptidase2.400.001
ecfJUnknown function2.070.002
yeaYPredicted lipoprotein2.020.029
insKIS150 conserved protein Insb, integrase core domain protein1.840.018
fabZ3R-hydroxymyristoyl acyl carrier protein (ACP) dehydratase1.790.008
bamELipoprotein stabilizer of BamABCDE OM biogenesis complex1.740.033
rseAAnti-RNA polymerase sigma factor σE1.530.013
tolBTol-Pal cell envelope complex1.440.025
clpXATPase subunit of ClpXP protease1.430.034
rutRTetR/AcrR family transcriptional regulator1.410.029
mdoGPeriplasmic glucan biosynthesis1.370.006
lptDLPS assembly outer membrane complex protein1.350.041
plsBGlycerol-3-phosphate O-acyltransferase1.340.027
rfaDADP-L-glycero-D-mannoheptose-6-epimerase1.330.003
fkpAPeriplasmic peptidylprolyl cis-trans isomerase1.230.004
RcsB regulon
yjbEExopolysaccharide production protein12.370.035
wzaPolysaccharide export protein9.120.015
wzcTyrosine-protein kinase Etk/Wzc3.490.036
osmCOsmotically inducible protein OsmC2.320.035
osmBOsmotically inducible lipoprotein1.900.048
rarARecombinase RarA1.390.006
CpxR regulon
mviMPutative virulence factor2.090.016
aroG2-dehydro-3-deoxyphosphoheptonate aldolase1.930.004
mdtCMdtABC-TolC efflux pump1.520.026
sltSoluble lytic murein transglycosylase1.490.02
ppiAPeptidylprolyl cis-trans isomerase A1.160.012
mdtBMdtABC-TolC efflux pump1.150.002
QseB regulon
qseBQuorum sensing two-component response regulator1.500.018
OmpR regulon
ompCOuter membrane porin protein C3.290.031
  1. a, indicates fold change relative to WT-RS218