Table 1 Nucleotide differences between CHIKV-BP and CHIKV-SP based on next generation sequencing data analysis
Nucleotide Position | CHIKV-BP | CHIKV-SP | LoFreq | FreeBayes |
|---|---|---|---|---|
737 | G | A | 3.82 | Too low |
932 | G | A | Too low | 35.59 |
5459 | C | T | 98.40 | HomoAlt |
5890 | G | T | Too low | 39.31 |
8149 | C | T | Too low | 32.72 |
8533 | A | C | Too low | 30.67 |
8677 | G | A | 97.1 | HomoAlt |
11,412 | A | T | Too low | 20.00 |