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Table 3 Summary of the pre-S genotyping results by DNA sequencing and Pre-S Gene Chip analysis in 20 HBV carriers.

From: A pre-S gene chip to detect pre-S deletions in hepatitis B virus large surface antigen as a predictive marker for hepatoma risk in chronic hepatitis B virus carriers

Case

DNA Sequencing Result

Pre-S Gene Chip Result

1

wild-type

wild-type

2

1. wild-type

1. wild-type

 

2. del nt 2894 to 3100

2. del nt 2894 to 3013 and nt 3074 to 3103

3

wild-type

wild-type

4

wild-type

wild-type

5

1. wild-type

1. wild-type

 

2. del nt 3040 to 3111

2. del nt 3044 to 3103

6

wild-type

wild-type

7

del nt 3218 to 8

wild-type

8

1. wild-type

1. wild-type

 

2. del nt 3084 to 3188

2. del nt 3074 to 3103 and nt 3134 to 3193

 

3. del nt 3148 to 29

3. del nt 3134 to 32

 

4. del nt 3138 to 59

4. del nt 3134 to 62

9

1. wild-type

1. wild-type

 

2. del nt 3202 to 36

2. del nt 3194 to 32

10

del nt. 2913 to 3118 and nt 3217 to 9

del nt 2924 to 2983 and nt 3014 to 3103

11

Wild-type

wild-type

12

wild-type

wild-type

13

1. wild-type

1. wild-type

 

2. del nt 3022 to 3205

2. del nt 3014 to 3103 and nt 3134 to 2

 

3. del nt 3132 to 37

3. del nt 3134 to 32

 

4. del nt 3057 to 3198

4. del nt 3074 to 3103 and nt 3134 to 3193

 

5. del nt 3132 to 3182

5. del nt 3134 to 3193

14

del nt 2854 to 2871

del nt 2854 to 2878

15

1. del nt 3205 to 3213

1. wild-type

 

2. del nt 34 to 54

2. del nt 33 to 62

16

1. wild-type

1. wild-type

 

2. del nt 3041 to 3126

2. del nt 3044 to 3103

 

3. del nt 25 to 56

3. del nt 33 to 62

17

1. wild-type

1. wild-type

 

2. del nt 2984 to 3221

2. del nt 2984 to 3013, nt 3044 to 3103, and nt 3134 to 2

18

1. wild-type

1. wild-type

 

2. del nt 3 to 56

2. del nt 3 to 62

19

del nt 3040 to 3111

del nt. 3044 to 3103

20

del nt 2948 to 3097 and nt 3112 to 2

del nt 2954 to 3013, nt 3044 to 3103, and nt 3194 to 2

Pre-S mutant Clones ( n )

21

19

Cases with Pre-S Mutations ( n ) (%)

14 (70%)

13 (65%)

  1. nt, nucleotide