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Table 2 The highly recurrent CNVs in schizophrenic subjects

From: Genetic copy number variants in sib pairs both affected with schizophrenia

Cytoband

Gene symbol

Aberration scoresa

  

A2

B1

C2

D1

D2

E2

H1

I1

7q36.1

PRKAG2

  

-3.34

-3.25

 

-3.72

 

-2.94

8q11.21

CEBPD

 

-2.75

 

-3.68

 

-3.59

 

-3.03

9q31.2

KLF4

 

-2.58

-2.53

-3.55

 

-3.42

  

9q34.2

RXRA

  

-3.12

-1.71

 

-1.67

-3.26

-2.53

 

UBADC1

 

-1.73

 

-3.54

   

-3.05

 

LCN6

-2.21

-1.97

 

-2.14

 

-3.27

 

-2.19

9q34.3

LCN8

-2.21

-1.97

 

-2.14

 

-3.27

 

-2.19

 

C9orf37

  

-1.22

 

-3.07

3.09

  

10q22.1

COL13A1

 

-1.52

-3.65

-3.3

    

12q24.13

LHX5

-4.11

-3.79

   

-3.23

  

15q26.1

RHCG

-4.02

-4.26

   

-3.45

  

17q25.2

SEPT9

  

-3.31

-3.34

 

-3.24

  

19p13.3

STK11

  

-3.07

   

-2.68

-2.43

19q13.31

PVR

  

-3.09

-2.44

3.24

   

21q21.1

BU678720

 

-2.79

 

-4.03

-3.81

   

21q22.3

C21orf57

  

-3.85

-3.22

   

-2.94

  1. a The aberration scores (n) are calculated by using the Agilent aberration detection method: no change is defined as n = 0, loss as n < -1, and gain as n > 1. Bold type indicates CNS-related genes. Description and GenBank accession no.: Protein kinase, AMP-activated, gamma 2 non-catalytic subunit (PRKAG2 , NM_001040633), Kruppel-like factor 5 (KLF4, NM_001730); UBA domain containing 1 (UBADC1, NM_016172); lipocalin 6 (LCN6, NM_198946); lipocalin 8 (LCN8, NM_178469); chromosome 9 open reading frame 37 (C9orf37, NM_032937); collagen, type XIII, alpha 1(COL13A1, NM_001130103); Rh family, C glycoprotein (RHCG, NM_016321); septin 9 (SEPT9, NM_001113496); poliovirus receptor (PVR, NM_006505); and chromosome 21 open reading frame 57 (C21orf57, NM_058181).