Table 3 Most frequently emerging T-cell receptor (TCR) β sequences that constituted a proportion greater than 5% of all sequences
Sample* | CDR3 amino acid sequence | CDR3 length (nt) | Percentage | V gene | J gene | D gene |
|---|---|---|---|---|---|---|
R1 | CASSEALNNEQFF | 39 | 17.76% | TRBV2 | TRBJ2–1 | TRBD2 |
CAKGRVPYEQYF | 36 | 6.83% | TRBV2 | TRBJ2–7 | TRBD2 | |
R2 | CACSASSSYEQYF | 39 | 14.16% | TRBV2 | TRBJ2–7 | TRBD2 |
CASSYSSQEQFF | 36 | 5.33% | TRBV6–3 | TRBJ2–1 | TRBD1 | |
R4 | CATMGGYTF | 27 | 7.71% | TRBV6–5 | TRBJ1–2 | TRBD1 |
NR1 | CASSFSPHEQYF | 36 | 9.43% | TRBV28 | TRBJ2–7 | TRBD1 |
CASSLGSQAEAFF | 39 | 8.21% | TRBV7–8 | TRBJ1–1 | TRBD1 | |
CASSPDRGDEQFF | 39 | 6.23% | TRBV12–3 | TRBJ2–1 | TRBD1 | |
NR3 | CASSSGQDTEAFF | 39 | 8.56% | TRBV9 | TRBJ1–1 | TRBD1 |
CASSPQGAYEQYF | 39 | 8.39% | TRBV9 | TRBJ2–7 | TRBD1 |