Database | References | Website | Type | Description |
---|---|---|---|---|
sORFs.org | [14] | sORF repository | Obtains experimental data from RIBO-seq with conservation analyses and rescanning MS data from PRIDE for updated small peptide validation | |
SmProt | [109] | sORF repository | Database on small proteins specifically from lncRNA, obtains data from RIBO-seq, literature mining and MS data, integrates conservation analyses | |
OpenProt | altORF resource | Contains information on protein isoforms and altORFs with experimental evidence, intergrates RIBO-seq, MS, conservation analyses and functional domains | ||
ARA-PEPs | [108] | sORF repository | Repository of putative sORF-encoded peptides specifically in Arabidopsis thaliana, data obtained from in-house Tiling arrays and RNA-seq data | |
PsORF | [107] | sORF repository | Database of sORF across different plant species, incorporating genomic, transcriptomic, RIBO-Seq and MS data | |
MetamORF | [110] | sORF repository | A repository of unique sORFs in H. sapiens and M. musculus genomes by experimental and computational methods | |
nORFs.org | [113] | novel ORF (nORF) repository | Provides aggregated information from databases such as sORFs.org, OpenProt and OpenCB |