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Table 2 Primers used in this study

From: Reduced virulence in tigecycline-resistant Klebsiella pneumoniae caused by overexpression of ompR and down-regulation of ompK35

Primers

Sequence (5′ → 3′)

Reference

Primers for cloning

  

 ompR-F/BamHIa

TGAGAGGATCCATGCAAGAGAATTATAAGAT

This study

 ompR-R/BamHIa

CTACAGGATCCTCATGCCTTAGAACCGTCCG

This study

 ompR-F

GGTGATCAGCGGCGTTTTCAT

This study

 ompR-R

AGTGTGCGAGCAAAGGAGCT

This study

Primers for deletion

 

This study

 Del-ompR-Fb

ACGCACTGACTATTGCAGTGAACCTTTGGGAGTACAAACATGTAGGCTGGAGCTGCTTCG

This study

 Del-ompR-Rb

GTGCGAGCAAAGGAGCTGCGCGGCGAAAAGCGCACGCGTTCATATGAATATCCTCCTTAG

This study

Primers for verification

 

This study

 Checkpri-ompR-F

CAGTTTTTCATATCCCTCGCG

This study

 Checkpri-ompR-R

CTGCAGTTTGTCGGTCATCA

This study

 pKD46-repA101-F

CCCCACGATTGAAAACCCTACAAGG

This study

 pKD46-repA101-R

GGAAAATCAACGTATCAGTCGGGCG

This study

Primers for qRT-PCR

 

This study

 Q-ompR-F

ACCGAGCAGGGCTTCCA

This study

 Q-ompR-R

CAGCATCAGATCCAGCACCAT

This study

 Q-ompK35-F

TACGGCCAGTGGGAATACAAC

This study

 Q-ompK35-R

CGTATTCGCCCGCTTTCA

This study

  1. aBold sequences refer to restriction enzyme cutting sites
  2. bUnderlined sequence refer to complementary to the plasmid sequence for overlapping PCR