Production of FMDV virus-like particles by a SUMO fusion protein approach in Escherichia coli
© Lee et al; licensee BioMed Central Ltd. 2009
Received: 7 April 2009
Accepted: 11 August 2009
Published: 11 August 2009
Virus-like particles (VLPs) are formed by the self-assembly of envelope and/or capsid proteins from many viruses. Some VLPs have been proven successful as vaccines, and others have recently found applications as carriers for foreign antigens or as scaffolds in nanoparticle biotechnology. However, production of VLP was usually impeded due to low water-solubility of recombinant virus capsid proteins. Previous studies revealed that virus capsid and envelope proteins were often posttranslationally modified by SUMO in vivo, leading into a hypothesis that SUMO modification might be a common mechanism for virus proteins to retain water-solubility or prevent improper self-aggregation before virus assembly. We then propose a simple approach to produce VLPs of viruses, e.g., foot-and-mouth disease virus (FMDV). An improved SUMO fusion protein system we developed recently was applied to the simultaneous expression of three capsid proteins of FMDV in E. coli. The three SUMO fusion proteins formed a stable heterotrimeric complex. Proteolytic removal of SUMO moieties from the ternary complexes resulted in VLPs with size and shape resembling the authentic FMDV. The method described here can also apply to produce capsid/envelope protein complexes or VLPs of other disease-causing viruses.
Foot-and-mouth disease (FMD) is a severe, highly contagious viral disease of cloven-hoofed animals, such as cattle, pig, sheep, goats and deer, and is the most economically devastating livestock disease in the world. The 2001 outbreak in the UK caused stock losses of more than 12 billion euros. Although animals can be protected against FMD by vaccination with killed FMDV, prophylactic vaccination is still impossible for several reasons. First, the danger that vaccinated animals may become carriers due to residual live virus in the vaccine would make it impossible to maintain an international export trade in meat and livestock. Second, at current prices, the cost of prophylactic vaccination using the killed FMDV is too high. Third, killed virus vaccines are not produced in many FMD-free countries. Unfortunately, the risks of new outbreaks are increasing due to globalization and the increased possibility of bioterrorism. If it were introduced into the United States, which is FMD-free, the disease could cause 100 billions of dollars in losses to the U.S. economy . The development of a cheap and noninfectious subunit or virus-like particle (VLP) vaccine for prophylactic use is therefore a matter of world-wide interest. VLPs consist of protein(s) derived from the capsid of a virus. They are noninfectious because while they resemble the virus from which they were derived, they lack the viral nucleic acids. VLPs used as vaccines are often very effective at eliciting both T cell and B cell immune responses [2, 3]. VLPs have also recently found application as as carriers for foreign antigens [2, 3] or scaffolds in nanoparticle biotechnology .
FMDV is a small RNA virus (27 nm in diameter) of the Picornaviridae family (see http://www.picornaviridae.com/). FMDV particles are composed of 60 copies of each of four capsid proteins termed VP1, VP2, VP3 and VP4, which are cleavage products of the P1 capsid precursor polypeptide. During assembly, five protomers, each containing one copy of VP0, VP1, and VP3, assemble into a pentamer, and 12 pentamers associate with a newly transcribed RNA molecule to form a virus particle. Cleavage of VP0 to VP2 and VP4, which is considered to be autocatalytic, is normally observed only upon encapsidation of RNA in mature virions . Attempts have been made to produce subunit vaccines by expressing FMDV capsid protein(s) in E. coli. These recombinant capsid proteins exhibited poor water solubility and were administered in vaccine studies either in denatured forms [5–7] or after a tedious refolding procedure . To overcome this technical bottleneck, we recently developed an improved SUMO (Smt3) fusion protein system in E. coli to produce several water-soluble virus capsid proteins, including FMDV-VP3 . Here, Smt3 serves not only as a solubility enhancer but also as a protease recognition site. SUMO proteases have the advantage of recognizing the tertiary structure of Smt3, rather than a linear amino acid sequence like other proteases commonly used in the fusion protein approach .
Studies have revealed that the capsid and envelope proteins of several viruses could either interact with SUMO or Ubc9 (the SUMO E2 ligation enzyme) or were SUMO modified during virus infection; these viruses including the Tula hantavirus, Epstein-Barr virus, cyto-Megalo virus, Dengue virus, herpes virus and Molony murine leukemia virus [11–14]. Moreover, quantitative SUMO modification of a vaccinia virus protein A40R prevents A40R proteins from self-polymerization and aggregation in vivo . We postulated that SUMO modification might be a common mechanism for virus proteins to retain their solubility or to prevent improper aggregation before virus assembly . We believe this hypothesis can be empirically tested by SUMO fusion protein approach, because several sumoylated proteins have been mimic in vivo by fusing a SUMO moiety at their N- or C-terminal ends [16–18].
In this report, we first simultaneously expressed SUMO fusion proteins of three FMDV capsid proteins (i.e., VP0, VP1 and VP3) in E. coli. These three fusion proteins form a ternary complex. This protein complex was then subjected to cleavage with a home-made SUMO protease to yield a VP0-VP1-VP3 complex. Finally, we showed by EM imaging analysis that the VP0-VP1-VP3 complexes were able to assemble into VLPs in vitro.
Materials and methods
Plasmid constructions and protein production
Gel filtration was performed by high-pressure liquid chromatography with a HiLoad 16/60 Superdex sizing column (GE Healthcare) and ran at a flow rate of 1.0 ml/min. The elution profile was followed by a continuous assay of the optical density at 280 nm. Commercially supplied molecular mass standards (including thyroglobulin, ferritin, catalase, bovine serum albumin, ovalbumin and lysozyme) were used to calibrate this column. The average elution position, K av, was computed by the equation K av = (Ve - V0)/(Vt - V0), where Ve and Vt represent elution volumes for the molecular mass standards and DTT, respectively. V0, the void volume, was determined by blue dextran 2000 (GE, Healthcare).
A droplet (4 μl) of purified protein complex was placed for 1 min at room temperature on a copper grid (300 mesh, Pelco, USA) coated with fresh carbon. The excess buffer was then carefully blotted away from the edge of the grid with Whatman #1 filter paper (Whatman Inc., USA). After staining for 4 min with 2.5% uranyl acetate, excess liquid was removed and the samples were air dried at room temperature. Bio-transmission electron microscopy (EM) was performed with a Tecnai G2 Spirit Bio TWIN (FEI Co., Netherlands) using an acceleration voltage of 120 kV. Images were recorded with a slowscan CCD camera (Gatan MultiScan 600) at a resolution of at least 1024 × 1024 pixels.
Three SUMO fusion proteins (His6-Smt3-VP0, His6-Smt3-VP1 and His6-Smt3-VP3) were simultaneously expressed in the same E. coli host cell (Fig. 1A; see Experimental procedures). Their theoretical molecular weights (MWtheo.) are 45,175 Da, 37,057 Da and 37,245 Da, respectively. These three SUMO fusion proteins were all strongly induced by isopropyl β-D-thiogalactoside and were water-soluble. Extracts containing coexpressed SUMO fusion proteins were purified on a Ni2+-resin that selectively retains His6-tagged polypeptides. Upon examination by SDS-PAGE stained with Coomassie Blue, the eluates predominately contained a protein triplet with identical staining signals (Figure 1B, left lane). The size of the purified fusion proteins was examined by gel filtration, by comparison with globular protein standards. The purified proteins eluted from a size exclusion column at an elution volume expected for a globular protein with apparent MW (MWapp.) of 112 kDa (Figure 1C), very close to the MWtheo. (119,468 Da) of a 1:1:1 ternary protein complex of these three SUMO fusion proteins. This ternary complex is not due to interactions between His6-Smt3 moieties on these fusion proteins. After His6-Smt3 moieties were cleaved off from the fusion proteins with SUMO protease, His6-Smt3 alone existed as monomers in solution (data not shown). We also found that the His6-Smt3-VP1 fusion protein became water-soluble only when it was expressed together with both His6-Smt3-VP0 and His6-Smt3-VP3 in the same E. coli host cell (data not shown). Therefore, this ternary complex likely contains one copy of each of these three SUMO fusion proteins. Since the protomer of the FMDV envelope also contains one copy of each of VP0, VP1 and VP3 , our results suggest that the purified fusion proteins are structurally similar to the authentic virus capsid proteins.
In this study, we have demonstrated for the first time the production of FMDV VLPs in E. coli. A bacterial expression system using E. coli has numerous advantages over other expression systems, including ease of handling, much lower cost and efficient generation time. The FMDV VLPs so produced may be applicable for prophylactic vaccination or as molecular tools in nanobiotechnology . Finally, viruses within the Picornaviridae family show much conservation in capsid protein composition and structural organization, including hepatitis A virus (HAV), the polio virus and the EV71 hand-foot-and-mouth disease virus. Recently, we also have successfully applied the same approach to produce soluble VP0-VP1-VP3 ternary complexes of HAV (CD Lee and Wang TF, unpublished data). Therefore, our method likely will be applicable to produce capsid protein complexes or VLPs of other Picornaviridae viruses.
Our results also indicated that addition of SUMO moieties could prevent aggregation of FMDV capsid proteins. After the SUMO moieties were removed from these capsid proteins, they were able to form VLPs with size and shape resembling those of native FMDV viruses. These results are consistent with the hypothesis that SUMO modification not only increases the solubility of capsid proteins but also prevents improper aggregation before virus assembly. It is of interest to further investigate if SUMO modifications indeed control virus assembly in vivo. Finally, our study here reveals a simple way to control FMDV VLP assembly in vitro, it may be useful in nanoparticle biotechnology.
This work was supported by Academia Sinica (AS-97-FP-M02 to TFW) and the National Science Council, Taiwan (NSC97-2321-B-001-015 to TFW). We thank Dr. Yuan-Chih Chang (Institute of physics, Academia Sinica) for help in EM imaging, Dr. Harry Wilson for English language editing and Dr. Chih-Hsiang Leng (Vaccine Center, National Health Research Institute) for helpful suggestions in VLP study.
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